NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0006246J48908_1028361

Scaffold Ga0006246J48908_1028361


Overview

Basic Information
Taxon OID3300003303 Open in IMG/M
Scaffold IDGa0006246J48908_1028361 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome C0912_C33A6_35 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)877
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003423Metagenome / Metatranscriptome487Y
F054895Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0006246J48908_10283612F003423GGAGGMEEFDAPQEHGVKQMRETIGRKDDAIKKLEAELESYKDKEIDNVFGKLGLSTDKGFGKALKQVYDGPVTTDAISQFAKDEYGFEANGTVETTPQSPPEPQVQDDARSRVAALDANSTSEIPLGSNEELVAALKGASVKDSLRAKLNYMDQEQQKK*
Ga0006246J48908_10283613F054895GGAGGMAGISLTNDAIYSQKINNFSGELFRVGGQRTPFLSATGGLNGGKVLQSTFWQIQAADSHTVSSEP
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