NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold D1draft_1026826

Scaffold D1draft_1026826


Overview

Basic Information
Taxon OID3300003310 Open in IMG/M
Scaffold IDD1draft_1026826 Open in IMG/M
Source Dataset NameDown-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA - L1-648F-DHS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)999
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Down-Flow Hanging Sponge Reactor → Down-Flow Hanging Sponge Reactor Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa

Source Dataset Sampling Location
Location NameUSA: University of Illionis
CoordinatesLat. (o)40.114056Long. (o)-88.226756Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020726Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
D1draft_10268261F020726AGGAVAPADSDFLLSLAALSLSFTGFTAVVVSLRGALGGEISERHLRLIRLYIEGGLMVTALALLPALLNLLHVPETVIWRLSSAAAAAVFTLL

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