Scaffold P12013IDBA_1001485

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold P12013IDBA_1001485

Scaffold P12013IDBA_1001485

Overview

Basic Information
Taxon OID	3300003312 Open in IMG/M
Scaffold ID	P12013IDBA_1001485 Open in IMG/M
Source Dataset Name	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P1 sample
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Campinas
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	15832
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (64.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Ore Pile And Mine Drainage Contaminated Soil → Ore Pile And Mine Drainage Contaminated Soil Microbial Communities From Mina Do Sossego, Brazil, In A Copper Mine

Source Dataset Sampling Location
Location Name	Mina do Sossego, Brazil
Coordinates	Lat. (^o)	-6.426389	Long. (^o)	-50.051389	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027649	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
P12013IDBA_10014855	F027649	AGGAGG	MTYGLNPRLFVENGPAIRAAEAHRRSSSDAYRAWRGLDQERRFALVEKALHRSSNDNCSDGLPIAL*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.