NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold P32013IDBA_1014349

Scaffold P32013IDBA_1014349


Overview

Basic Information
Taxon OID3300003313 Open in IMG/M
Scaffold IDP32013IDBA_1014349 Open in IMG/M
Source Dataset NameOre pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P3 sample
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Campinas
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3370
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Ore Pile And Mine Drainage Contaminated Soil → Ore Pile And Mine Drainage Contaminated Soil Microbial Communities From Mina Do Sossego, Brazil, In A Copper Mine

Source Dataset Sampling Location
Location NameMina do Sossego, Brazil
CoordinatesLat. (o)-6.426389Long. (o)-50.051389Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035205Metagenome172Y

Sequences

Protein IDFamilyRBSSequence
P32013IDBA_10143495F035205GAGVATYGAGMAAKGQPASVRLRLTWSQRRAFVLTVAGFQVLVWADALLNDGRFGGNWRTALVGLGLIGMAAATWWVGTSLTRRGIVIHAVPTLVIPWDEVHEIEVEHQLGIKTVVVHHGVTSRRRTRLSAPTTGPLGRDEQFQEKVRVLRSYWAAQRAGQAA*
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