Scaffold P22013IDBA_10006085

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold P22013IDBA_10006085

Scaffold P22013IDBA_10006085

Overview

Basic Information
Taxon OID	3300003315 Open in IMG/M
Scaffold ID	P22013IDBA_10006085 Open in IMG/M
Source Dataset Name	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P2 sample
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Campinas
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6791
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil → Ore Pile And Mine Drainage Contaminated Soil Microbial Communities From Mina Do Sossego, Brazil, In A Copper Mine

Source Dataset Sampling Location
Location Name	Mina do Sossego, Brazil
Coordinates	Lat. (^o)	-6.426389	Long. (^o)	-50.051389	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042189	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
P22013IDBA_100060852	F042189	AGGAG	VADLYEVLLVDDGQRWHAGWVVDDDTETDVLLRDHGKVLLFGSRAALEHHAQEHGWELQDDLPDEIDLDLGGWLSKGMPLPPTAEVSELWHLLYDDPVAGRALAGEELGEAYDDLVEEAPDWFAEHGPLARQALATAVSRLRSVCARA*

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