NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold soilL2_10013306

Scaffold soilL2_10013306


Overview

Basic Information
Taxon OID3300003319 Open in IMG/M
Scaffold IDsoilL2_10013306 Open in IMG/M
Source Dataset NameSugarcane bulk soil Sample L2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11789
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location NameAyr, Queensland Australia
CoordinatesLat. (o)-19.733298Long. (o)147.17873Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007132Metagenome / Metatranscriptome357Y
F011178Metagenome / Metatranscriptome294Y
F026373Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
soilL2_1001330610F011178GAGMSAAYGMSTMRITVEDRGPSLRERLRERLDRASRLWCTEHRQAVVAVSIHARENGWFDSTWTTCCEGLERQAAAILKDRC*
soilL2_1001330613F007132AGGAMRQAVRATAGKVLRSDDLIPGERETAAGILRANPDLGNPHVVRCDWCRETRTLFRDESDGPFIVTSHGWRCEPCDARAASQEVKF*
soilL2_1001330614F026373AGGAGMTKRAPLSFGEIRVYDGVAERTGVSFERSAVRRSGGCCRSLTEMIRKARAVGDGYLYLPLDMWPADTERIELQKPWISMSSLPSDGPE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.