NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold soilH1_10008040

Scaffold soilH1_10008040


Overview

Basic Information
Taxon OID3300003321 Open in IMG/M
Scaffold IDsoilH1_10008040 Open in IMG/M
Source Dataset NameSugarcane bulk soil Sample H1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7789
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location NameAyr, Queensland Australia
CoordinatesLat. (o)-19.733298Long. (o)147.17873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000151Metagenome / Metatranscriptome1897Y
F000174Metagenome / Metatranscriptome1764Y
F011193Metagenome / Metatranscriptome294Y
F011326Metagenome / Metatranscriptome292Y

Sequences

Protein IDFamilyRBSSequence
soilH1_1000804012F011193N/AVFLAFNGKALQREVQIKSQRSGGYLVDGLNGGETVITAAPPTLKDGDKIKIKGQS*
soilH1_100080403F011326GGALASGLLCGLLALVVIFTNRNAFHSPIAVVVVAAIGSAAVLLQLRLRNREEAKAVHPPIWLNLLGIAFGLLTLFGDWFKLNADMIQLLALAAVGSFGVSGAIILHAFRKGRSKETSGS*
soilH1_100080406F000174AGGMMRNVYEVLRQKELELARLEKEVEALRVAAPLLSEDKEMAEATNNKPTLAATTPVSQQPIRIPQPAVNQAPQPARAAGWEDTAKRWP*
soilH1_100080407F000151GGAGGMDGGRSGSENRNLTGGPHVQEVLRAAQDELRVLLQQRAEIMKRIGTVKQTIIGLANMFGDEVLSEDLLELVDRKSGGRQPGFTKACRMVLMEAGHPLGAREVCEHIQRRLPPLLLRHKDPLASVTTVLNRLVEYGEARAVVRENGRRAWEWVSEPAEASFDRAHRDENFTEV*
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Biomedical Sciences Research Center "Alexander Fleming"
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