NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold soilH2_10176601

Scaffold soilH2_10176601


Overview

Basic Information
Taxon OID3300003324 Open in IMG/M
Scaffold IDsoilH2_10176601 Open in IMG/M
Source Dataset NameSugarcane bulk soil Sample H2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3468
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location NameAyr, Queensland Australia
CoordinatesLat. (o)-19.733298Long. (o)147.17873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070071Metagenome / Metatranscriptome123N
F073765Metagenome / Metatranscriptome120N
F087420Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
soilH2_101766013F070071GAGGMLTIIGAAMVAGTTAGFWYLLPRNGREHPVLENTGIGSMATITILTLFIVGIALFCEGLLG*
soilH2_101766017F087420GAGGMTGKLIAAAASVSMAVATLLMLTALPQSEAHAAKAPYVGCVAVTRQEYDSARRQHLLRTRYSQYMRTGLPGRRQYWYCR*
soilH2_101766018F073765GAGGMRQLLGKIRAGRDVIEEVYLSEQVRCRECQKTVPIGIEVVAVQRQSNPKKILKRTWYCRAHAGDYESRARGET*
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