NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold soilH2_10249855

Scaffold soilH2_10249855


Overview

Basic Information
Taxon OID3300003324 Open in IMG/M
Scaffold IDsoilH2_10249855 Open in IMG/M
Source Dataset NameSugarcane bulk soil Sample H2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3500
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location NameAyr, Queensland Australia
CoordinatesLat. (o)-19.733298Long. (o)147.17873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033509Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
soilH2_102498552F033509AGGGGGMSGTELLVNHAMKLVLIAILAGLFARRRAHLCWSFVAYLLTTLVCNSLMSFWPDQFYRLWFYSFMQDLLQALKLAVAAELTYRTFRAFPGAAARVRVLLAPIFFVPLLFTSKVPPGATYQDIIQIYQPQLQAAIIWIFTAITLLIAWYRVPVHAVHRAILIGFAAYLLIFTTLLNVLRDFGFENLRNFVGTADGYAYVLLLGWWAYAAWVPARRPMLALDVLKRLQLETV*
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