Scaffold Ga0006572J49612_1081908

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0006572J49612_1081908

Scaffold Ga0006572J49612_1081908

Overview

Basic Information
Taxon OID	3300003331 Open in IMG/M
Scaffold ID	Ga0006572J49612_1081908 Open in IMG/M
Source Dataset Name	Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-2-R (Metagenome Metatranscriptome, Counting Only)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	603
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Source Dataset Sampling Location
Location Name	Joint BioEnergy Institute, California, USA
Coordinates	Lat. (^o)	38.5402	Long. (^o)	-121.75	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001784	Metagenome / Metatranscriptome	635	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0006572J49612_10819081	F001784	N/A	MGEVIHATFGTEREWKQTRDKTVDGLLTIGTLFGDDEELMRAKADCVYHILRQIVEDIPTVQITTRLPENLSEEQLAILTESIRQAALKGIEVAMTHSVQVLMGSIYDLCTSKLKDGRC*

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