Scaffold GBSed

Basic Information
Taxon OID	3300003332 Open in IMG/M
Scaffold ID	GBSed_10003408 Open in IMG/M
Source Dataset Name	Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003332 Open in IMG/M

Scaffold ID

GBSed_10003408 Open in IMG/M

Source Dataset Name

Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10403
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (80.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10403

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (80.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Sampling Location
Location Name	Guyams Basin, Gulf of California, Pacific Ocean
Coordinates	Lat. (^o)	27.01	Long. (^o)	-111.43	Alt. (m)	Depth (m)	2000
Location on Map

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Source Dataset Sampling Location

Location Name

Guyams Basin, Gulf of California, Pacific Ocean

Coordinates

Lat. (^o)

27.01

Long. (^o)

-111.43

Alt. (m)

Depth (m)

2000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F016235	Metagenome	248	Y
F028993	Metagenome	189	N
F040961	Metagenome	160	N
F067298	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
GBSed_1000340817	F040961	AGGTGG	MVNAVECRWSEEQAKGLITFLIAEKKRHEKDIHHIERSIERIKREYGFTDADIAKCEELAWLYVEW*
GBSed_1000340818	F016235	GGAGG	MSNDNIPSTPPLFSHRKWRHRRGYQRCVYYIGIDKNDSYFGEGFPLNCVIKFKIPVYRYAPRTWEVAKLLATLRILYGEEYMEELMAMAEVEYLKMRRDKKWLIHFGENSD*
GBSed_100034082	F028993	AGGTGG	MGKIAEKASRKRAERIAVSETYYKEGVEEPSKDWLTEFKRAKDRRNAGLRRAMDEGLFEKGAERVGTEGWKENTLAKADRWLTGATSEVAQKKYEEAMSDVEECIERARKAVEGMPTTTIEQRAERSKRFQIEMHKCMEEKKRRH*
GBSed_100034085	F009582	N/A	MRERGRRREFVGGTGREVKEARVDVVLQRVEEEIGEEITAYPQHVRRYGVNNIFQRAFAYLLGWQSNGKPIKVGATAGGLLKVAISGAGFEQIDTLEGTAGVEWSSALQFAWTPNRIRFEALDYPYLAKFSTDGVTWSDAVYVDGDMPRDFDINARYVKVRRYGGTNASYYIIGMR*
GBSed_100034086	F067298	AGGAGG	MVVVIREEEAEKIIKARNIKRRIRELDRQIAELQREKAHLLKEYADLGISIE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold GBSed_10003408

Overview

Ecosystem & Geography

Associated Families

Sequences