Scaffold GBSed

Basic Information
Taxon OID	3300003332 Open in IMG/M
Scaffold ID	GBSed_10006286 Open in IMG/M
Source Dataset Name	Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003332 Open in IMG/M

Scaffold ID

GBSed_10006286 Open in IMG/M

Source Dataset Name

Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6757
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (92.86%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

6757

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (92.86%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Sampling Location
Location Name	Guyams Basin, Gulf of California, Pacific Ocean
Coordinates	Lat. (^o)	27.01	Long. (^o)	-111.43	Alt. (m)	Depth (m)	2000
Location on Map

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Source Dataset Sampling Location

Location Name

Guyams Basin, Gulf of California, Pacific Ocean

Coordinates

Lat. (^o)

27.01

Long. (^o)

-111.43

Alt. (m)

Depth (m)

2000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F016098	Metagenome	249	Y
F016235	Metagenome	248	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N
F040961	Metagenome	160	N
F067298	Metagenome	125	Y
F091133	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
GBSed_100062861	F009582	AGAAGG	MSVRRGRREFVGGTGRAVKEARVDVVLQRLEENIGNEINAYPSHIYRYGVNNIFQRSLAYLFGWKTNGEPHKVAVSSSGLLKVAISGAGFEEIDALEGTATVTWSDALEFAWTPNRIRFEALDYPYIAKFSKDGVTWSDDIYVDNATPRDFDINAKYIKVRRYGGTDAKYWIIGMR*
GBSed_1000628611	F024940	AGG	MEREIIHKKIRSIKELREFITDHLIEHSEMRTKAMLANNTFVIAYEQGFLDALKTIRDLLSEEGLLMYRYVFEEEQKREEDENRDTF*
GBSed_1000628612	F040961	AGGCGG	MVNAAECRWSEEQAKGLLTFLIAEKKRHERDIHNIERSIQRIKREFSLTDADIAKCEELAWLYVEF*
GBSed_1000628613	F016235	AGGGGG	MSEEKIPSSPPLFSHKKGRHRQGYQRCVEYVGIDKNDDYFGEGYPLCAVIKFRIPVTRYTPRTYEIARLLATLKILYGEEYMEELLAWTELEYVRMRRRAEWVTIFGHDSD*
GBSed_1000628614	F024941	AGGAGG	MGYNFWTRLGLIKGEEYSKLLERAWNLGWSQRRFFREARERGLGYAEALMREDWHRFGYVESARTYSGKLTQHIFFDEVVLKLHDKEGWSWKEIKEFLNERKDPRKWTPETKVKERIYKSYLKEALPEKADT
GBSed_100062862	F067298	GGAGG	MGVITEEDAEKIIRALNLKRRIGELEKQIGELQRRKAKMEQEYENLGINIE*
GBSed_100062865	F091133	GAG	MGIFDVWSSWTDWLSDWWDAFKDKIWDIKTELWSWVDDIAKYWVGRANEFFDILNHAWSEVEDLMEEAKSYADDIVTDAILKIDDWVTTFGETVADLWEKIEPYFEPIITPIENAIDTIQNVKIPSLEDIINVLNESVNNILNWDIPFLNQSVTDLWNEANNIWTEIWDNIWISLNNAWDDINNIWNTFAEIPADIWNGITEGWEGFTDFLFEQGERLIEKILDIDIPIDDIIEELERRFKGGEK*
GBSed_100062869	F016098	AGGCGG	MSEERKYVYMRKTQSGNGVRMRDGETVYIASIRSLEAFLQGEREFVAFAKMPNRKIPNENNERNLIYTWCDKCQGLRFFRKISEDKWRCEMCGTEKTATELIEKVRSILETD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold GBSed_10006286

Overview

Ecosystem & Geography

Associated Families

Sequences