Scaffold GBSed

Basic Information
Taxon OID	3300003332 Open in IMG/M
Scaffold ID	GBSed_10008410 Open in IMG/M
Source Dataset Name	Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003332 Open in IMG/M

Scaffold ID

GBSed_10008410 Open in IMG/M

Source Dataset Name

Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9127
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (90.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9127

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (90.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Sampling Location
Location Name	Guyams Basin, Gulf of California, Pacific Ocean
Coordinates	Lat. (^o)	27.01	Long. (^o)	-111.43	Alt. (m)	Depth (m)	2000
Location on Map

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Source Dataset Sampling Location

Location Name

Guyams Basin, Gulf of California, Pacific Ocean

Coordinates

Lat. (^o)

27.01

Long. (^o)

-111.43

Alt. (m)

Depth (m)

2000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F016235	Metagenome	248	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N
F028993	Metagenome	189	N
F040961	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
GBSed_1000841016	F024940	AGAAGG	MEQEIIHKKIRSIKELREFITDYLIEHSEQRAKALITQNIYAYMYEQGFLDCLKTIRDLLSKEGLLMYRYVFEEEQKRKEDENRDTF*
GBSed_1000841017	F040961	AGGAGG	MVNAVECRWSEEQAKGLLTFLIAEKKRHERDIHNIEKSIQRIKREFGFTDADIAKCEELAWLYVEF*
GBSed_1000841018	F016235	AGGAGG	MSKAKISSSPPLFSHKKGKQRHGYQRCVTFVGIDKNDDYFGEGFPLCAVIKFKRSIYRYTPRTYEIARLLATLKILYGKEYMEELLAWAELEYVRMRREKKWLTLSGDDSD*
GBSed_1000841019	F024941	AGGCGG	MAYAFWGRLGLTKGEEYRKLLERAWNLGWSQRRFFREARIKGLGYAEKLMREDWHRFGYIESARTYEGKLTQHIFFDEVVRKLHYEEKWSWKEIKEFLNERKRPERWTPETKVKERIYKSYLSEALPEKADT*
GBSed_100084102	F028993	GAGG	MADIVEKAVKKRSERIAVSEAYYREGVESPTKDWLEQFKKAKDRRNAGLRRAMEEGLFEAGAERVGTEGWREATLAKADRWLTGATSDVANRRYEERMRDVAECIERAKKAVEGMPTTTIEQRAEKSKRFQIEMSKCMEEKKRRR*
GBSed_100084104	F011723	AGGTGG	MVIYNKGLSRDGSTDEGREILSLTSKEEEKYKVRRIVITDVVLNPLVMEIWLERDRIGENIPLEVASDIAPERVIDLDIEIPIGYTFKVIIKPQTSGNQGSVRGWVEYEIME*
GBSed_100084105	F009582	GAG	MSARRGRREFVGGTGRGVKEARVDVILQRLEENIGGEIKAYPSHVYRYGVNNIFQRTLAYMFGWKTNGEPQKVAVTEGGLVKVAVSGAGFEDIDTLTGVAGNEWSDALEFAWTPNRIRFEALDYPYCAKFSKDGVTWSDAVYVDGETPRDFDINAKYVKVRRHGGTNATYWIIAMR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold GBSed_10008410

Overview

Ecosystem & Geography

Associated Families

Sequences