Scaffold GBSed_10013484

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GBSed_10013484

Scaffold GBSed_10013484

Overview

Basic Information
Taxon OID	3300003332 Open in IMG/M
Scaffold ID	GBSed_10013484 Open in IMG/M
Source Dataset Name	Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3916
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Sampling Location
Location Name	Guyams Basin, Gulf of California, Pacific Ocean
Coordinates	Lat. (^o)	27.01	Long. (^o)	-111.43	Alt. (m)		Depth (m)	2000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029954	Metagenome	186	N
F035145	Metagenome	172	Y
F050065	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
GBSed_100134843	F029954	AGG	MELKVREYKFNDGERKVEYVIPPTNTPFFSVLFSKRGEVRMIAIHQRVLEYHEAVVLMSLLCGVIKKVIKNEERIR*
GBSed_100134847	F050065	GAG	VNDEVEKILLAITYLKGLLNDAKRRGDKELVRYVGEIIGVYEARLQSQNNNN*
GBSed_100134848	F035145	GAG	LEKLSEFMRRDYNLKTIITEECCGLVRVEVICLTVNTSFPLLTLTYNKCTKHFALAIERRFVTQKSTLQALTEALEKVKEVMKDGKME*

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