NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GBSed_10016024

Scaffold GBSed_10016024


Overview

Basic Information
Taxon OID3300003332 Open in IMG/M
Scaffold IDGBSed_10016024 Open in IMG/M
Source Dataset NameMarine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3439
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Sampling Location
Location NameGuyams Basin, Gulf of California, Pacific Ocean
CoordinatesLat. (o)27.01Long. (o)-111.43Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016098Metagenome249Y
F016235Metagenome248Y
F024940Metagenome203Y
F024941Metagenome203N
F040961Metagenome160N

Sequences

Protein IDFamilyRBSSequence
GBSed_100160241F024941GAGMAYNFWARLGLVKGEEYSKLLEKAWNLGWSQRKFFREARARGLGYAEGLMREDWHRFGYVESARTYEGKLTQHVFFDEVVRKLHDKEGWSWKEIKEFLNERKDPRKWTPETKVKE
GBSed_100160242F016235AGGAGGMSKTKIPSFPPLFSHKKGRHRHGYQRCVAFVGIDKNDDYFGEGFPLCAVIKFKHPIYRYTPRTYELARLLATLKILYGEEYMEELLAWAELEYLRMRCEEKWLTIFGHDSD*
GBSed_100160243F040961AGGTGGMVNAVECRWSEEQAKGLLTFLIAEKKRHERDIHNIEKSIQRIKREFGFTDADMAKCEELAWLYVEF*
GBSed_100160244F024940GAGMEREIIHKKITSIKELREFITDYLIEHSEMRTKGMLSQNTFVIAYEQGFLDALKTIRDLLSKDGLLMYRYVFEEKKEREEDEHRDTF*
GBSed_100160246F016098N/AMSEERKFVYMRRTRSGNGVRMRDGEIVYIASIRSIERFIQGEREFVAFAKIPYRQIPNEDNTRNLIYTWCDKCQGLRFFRKISEDRWRCEMCGTERTATELIEKVRSILEYD*
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