Scaffold GBSed_10019902

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GBSed_10019902

Scaffold GBSed_10019902

Overview

Basic Information
Taxon OID	3300003332 Open in IMG/M
Scaffold ID	GBSed_10019902 Open in IMG/M
Source Dataset Name	Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2916
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Sampling Location
Location Name	Guyams Basin, Gulf of California, Pacific Ocean
Coordinates	Lat. (^o)	27.01	Long. (^o)	-111.43	Alt. (m)		Depth (m)	2000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029954	Metagenome	186	N
F049343	Metagenome	146	Y
F055333	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
GBSed_1001990211	F055333	N/A	VRPVRVCLAGRSTGMGAYTQHYLYSIRQRKLLEPHRTEYSRTGNHWDDIYYLLPGKYFLAIRDISNSGKHYCRYALLRVLTPEEYREKVKDKEYAMRNFDHYYRNYAYEIIDLPTKQPPAEYVEVPCSCLKGKAEW*
GBSed_100199022	F049343	AGGGGG	MVEWSRLRDKLRKGEWYAFSAVCFLAGVVAGKGITVLGRAEPVFALTAVGAVLLAYWLALLTATIVAEIKEAPKTI*
GBSed_100199026	F029954	AGG	MELRTKEYKFNDGERKVEYVIPPTNTPFFSVIFGKKGEVRMIAIHQRVLEYHEAVVLMSLLCGEIRSKIPTKEMMEDE*

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