Scaffold GBSed_10042023

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GBSed_10042023

Scaffold GBSed_10042023

Overview

Basic Information
Taxon OID	3300003332 Open in IMG/M
Scaffold ID	GBSed_10042023 Open in IMG/M
Source Dataset Name	Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1672
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Sampling Location
Location Name	Guyams Basin, Gulf of California, Pacific Ocean
Coordinates	Lat. (^o)	27.01	Long. (^o)	-111.43	Alt. (m)		Depth (m)	2000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F015290	Metagenome	255	N
F024453	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
GBSed_100420231	F007460	AGGTGG	MDDEEGMGMGAAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTTIVGIDEIAPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKY
GBSed_100420232	F015290	AGGAG	MLNNKGQAGEIAVFVILVFMVAFAYIFISPIVQNIKDVVPTIADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV*
GBSed_100420233	F024453	AGGAGG	VKMEIPERDGIVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGEAEVGEEVKSVREEGREGDMEKVRSVHELAQVRRANAKQ*

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