NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26347J50199_1016722

Scaffold JGI26347J50199_1016722


Overview

Basic Information
Taxon OID3300003350 Open in IMG/M
Scaffold IDJGI26347J50199_1016722 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)775
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001121Metagenome / Metatranscriptome771Y
F069287Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
JGI26347J50199_10167221F001121N/ASLVVAPTNASNDVIALSAVSPNATGKDITVVDPTTAGISTQGNDVDLDVEALGMFSVANNSCSLSGNPLPLLRPASGTTTADLCVFSESGLDTSMTFTVSGPGDVTVIAKQPAGLGIIHLTLQIPASALPGARTLFIQNTNLDETAASGALVIQ*
JGI26347J50199_10167222F069287GAGGMSYVERRRFLWILFLGGLALLVLAVAASATTLSRLKFEDLALESTAVARLRCLGATSQWEQGEIWTETRFEVVQREKGTLPGIVTVRLLGGQVGHL
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