NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26346J50198_1003764

Scaffold JGI26346J50198_1003764


Overview

Basic Information
Taxon OID3300003351 Open in IMG/M
Scaffold IDJGI26346J50198_1003764 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1423
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049845Metagenome / Metatranscriptome146Y
F087593Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
JGI26346J50198_10037641F049845AGGAGLSFAFTPYTLRHRPPMTHQFKFDHENKILLLRIEERLTDKLARALYWEVRKYSTSTDASAAIYDLSGVTEFAISPEMIRDLVNREPAMLDATKRPRCLVAPAVFGLAISRLCEIAVEPRNPLLKIVLSMDDAFS
JGI26346J50198_10037642F087593AGGTGGVNLRCYLFSLLRIHRPDCEHCDAHETRGDEMRKRLEELNWRTQPGSLNHEDHGGAAEVLDSEPGEFAASPPTSLNAKQQKKKKIA*

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