NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26345J50200_1024439

Scaffold JGI26345J50200_1024439


Overview

Basic Information
Taxon OID3300003352 Open in IMG/M
Scaffold IDJGI26345J50200_1024439 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)641
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018767Metagenome / Metatranscriptome233Y
F048444Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
JGI26345J50200_10244391F048444AGGAGMKLALFQELVDLNRAFEEVIRGLSRMQKGRHFQRDLIRYARADVEIARVDANREFFDNFEALVENDASWAYRFQREYKQKAKDPDDIYFDIKD
JGI26345J50200_10244392F018767N/AERLKRAKXSQLDSSCFDNELVLLEDHRARLNSYFCSTIQRPEQQDPVRFESRYCEFEKSTLDEVQVYRDVGMVEDRRRIEGKPPKVQFFTPEEQREWERQYPKPPCDAQNEPQSSEGDQP
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