Scaffold JGI25321J50212_10138418

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25321J50212_10138418

Scaffold JGI25321J50212_10138418

Overview

Basic Information
Taxon OID	3300003366 Open in IMG/M
Scaffold ID	JGI25321J50212_10138418 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/23
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	555
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Clay → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic

Source Dataset Sampling Location
Location Name	Mt. Terri, Switzerland
Coordinates	Lat. (^o)	47.379	Long. (^o)	7.1648	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013826	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25321J50212_101384181	F013826	AGGAG	MAVCWRCPRCNEVSCEEDVNAQGHPLACDHCERPFLPQQTICVICDAPNPWARRDSLHYWCRECGNTQTFYGYTATA*

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