NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25407J50210_10070891

Scaffold JGI25407J50210_10070891


Overview

Basic Information
Taxon OID3300003373 Open in IMG/M
Scaffold IDJGI25407J50210_10070891 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)870
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026500Metagenome197Y
F031020Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
JGI25407J50210_100708911F031020N/APPDLDPVATAHDPEAERGPKAVMTAYASALEGRDAGLAADLYAENGLLTSADERISGRAGIAGWHEDLLRRGRVTATPAGQGNDGGRLEVDSAAGRYLVELAFDAAGRIGTARWLTPTEAERPQEERERSAT*
JGI25407J50210_100708912F026500GGAGMTEDLGGDAVRYEGDRPVAVGDLRLAQPTRMATTSAGFWGLYEVGDQVLVVHPAGAVRGSVSDVRARLAAIAADEGRDEADRETARSFLPFLGDDDPGAATDVPRSRVEQGPPPTYDLSDERNTP*
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