Basic Information | |
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Taxon OID | 3300003375 Open in IMG/M |
Scaffold ID | JGI26470J50227_1000662 Open in IMG/M |
Source Dataset Name | Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13600 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (56.52%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog Lake, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0409 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009462 | Metagenome / Metatranscriptome | 317 | Y |
F026556 | Metagenome / Metatranscriptome | 197 | Y |
F063276 | Metagenome | 129 | Y |
F070810 | Metagenome | 122 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI26470J50227_10006622 | F063276 | AGGA | MQDSTIRQNLDAVVALIFAVCAVAFAIWWNLDHPHITVKYDCSIAEISPDYPIQVKEACRKLRAQNN* |
JGI26470J50227_10006623 | F070810 | AGAAG | METVNSVYEIRIDWNNQRNSWWNEVCADIMEVFGLPGLKYTSHPYETCMLFRFKSKKDYHLCKILLSDKI* |
JGI26470J50227_10006625 | F026556 | GGAGG | MSLTSSLIRLAFGIIFIIIAISLGPIIGIWALNTLFPALHIPLTWETWAAFNILFSGSLIKFGTGK* |
JGI26470J50227_10006627 | F009462 | N/A | MLWANIEHLKQLKEMKMQVEQLHESVKDTYKETIIKEHEGFRLVLKKHEVLNPKGLFSVNLEQQSLKDGEVTDTAVYNFFMTQDEMTTLASALTV* |
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