Scaffold JGI26470J50227_1000906

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI26470J50227_1000906

Scaffold JGI26470J50227_1000906

Overview

Basic Information
Taxon OID	3300003375 Open in IMG/M
Scaffold ID	JGI26470J50227_1000906 Open in IMG/M
Source Dataset Name	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11176
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location Name	Trout Bog Lake, Wisconsin, USA
Coordinates	Lat. (^o)	46.0409	Long. (^o)	-89.686	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000843	Metagenome / Metatranscriptome	864	Y
F002405	Metagenome	562	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26470J50227_10009062	F000843	N/A	MALYQITPNQXPKVWPIVAPLLQKAIDVDPDSNTIEQTEYSVRTGKTFLLIWDEPEVGITGACTVEFFDYPRERVAHVNLMGGKGIVRQHVFEEAKNWMRLHGATKAQCWTKGSLVKMYEKMGMENTHQVMRIKL*
JGI26470J50227_10009065	F002405	GAG	MIIEPEWVFPFEGMDVGDSFFIPTLRFAELIYALDCGAKRAKIRVKSYVSTKDGCIGVRTWRIR*

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