NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI26470J50227_1011332

Scaffold JGI26470J50227_1011332


Overview

Basic Information
Taxon OID3300003375 Open in IMG/M
Scaffold IDJGI26470J50227_1011332 Open in IMG/M
Source Dataset NameFreshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2204
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location NameTrout Bog Lake, Wisconsin, USA
CoordinatesLat. (o)46.0409Long. (o)-89.686Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F011148Metagenome / Metatranscriptome294Y

Sequences

Protein IDFamilyRBSSequence
JGI26470J50227_10113322F011148GGAGMAVFNKNTLTQVSGFDNQIIAGELVYQQQTYWNLTLSGVDLTGATIDAQIIRRQLSNVQDTRYGLSFDIGDYVPTPDPIPLTIVNRNDSTGFFTLVIDSTAWDLVSGQADLDIASINGAGFSGRIKISFPASGSNPANDLIIFLLFLVRSDAIVNN*
JGI26470J50227_10113323F000324AGGMSQVIPQSKVIPVPPAHSLTYDGATLNIFHVNKGEGLPTHNHLYAHATICMAGSCVVRKEGKEVLMTKDTQPINLVAIEWHEIEALEDGTVFVNVFAEGKY*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.