Scaffold JGI26470J50227_1018592

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI26470J50227_1018592

Scaffold JGI26470J50227_1018592

Overview

Basic Information
Taxon OID	3300003375 Open in IMG/M
Scaffold ID	JGI26470J50227_1018592 Open in IMG/M
Source Dataset Name	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1563
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter → Polynucleobacter nymphae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location Name	Trout Bog Lake, Wisconsin, USA
Coordinates	Lat. (^o)	46.0409	Long. (^o)	-89.686	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023521	Metagenome / Metatranscriptome	209	Y
F064346	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26470J50227_10185922	F023521	AGGAG	MKDPIVFAGYSRQADGTMKFRTATNEARVNQLVAFGEEVHMIRINPVYSKSAAAKELLRLDHANGAKELEQFYSNQVRDENPFRVVKVKVPTVFMQELTGAKIEEEPMTRKEAARLRAEWNRKHAHLSYDGE*
JGI26470J50227_10185923	F064346	GGAG	MSKHRNADYRQIVRNMPIQEIDGLFETFQNCQTRTALETEIMDILEAEIERRIANWEVAYV*

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