Scaffold JGI25910J50241

Basic Information
Taxon OID	3300003388 Open in IMG/M
Scaffold ID	JGI25910J50241_10004027 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003388 Open in IMG/M

Scaffold ID

JGI25910J50241_10004027 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5326
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (81.25%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5326

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (81.25%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F000980	Metagenome / Metatranscriptome	814	Y
F001460	Metagenome / Metatranscriptome	690	Y
F001781	Metagenome / Metatranscriptome	635	Y
F003603	Metagenome / Metatranscriptome	477	Y
F006984	Metagenome / Metatranscriptome	360	Y
F034924	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25910J50241_100040271	F000980	N/A	MTTYNKYTWVCTGDCDALIEYTYKDGFGWPNGVMQLTCPCNSTCTLLSVEDVTIPYTDTPLLTKEEPMEETTYGATVTPVVPESYNANLLVTYKVIHGYSDAEYATDKVASIEWSLHNGRQAQKQSNMYVSKIDTVKDIITEAYADSDDQETLRAIAEALDIELTRTVEWTASXEVSGTIELDLLAGYDTDIESEITDAIYAESQNGNIEITDQEVCNVSEC*
JGI25910J50241_1000402711	F001781	GGAG	MKPADKDKLNECLKILDTTDLGLSLVWLWTWSTINNIFEDETYKQNCTIDEMWDHLCEAVEAGQGFSLEYGAEQHNDDVQDWMLSRDYIVDTMFEEDEEEDEDATD*
JGI25910J50241_1000402714	F034924	N/A	MLNGKKGNPYMPLYRVFGTRFTNYYTIVSATDEYQAAELANARPMIEWDEIPTDDVVEATDVFLDEDTLIDLEGGL*
JGI25910J50241_1000402716	F003603	AGGCGG	MKTKEEQIGELLANSVEDHFFNPAALGRYLADQPTYTLDRIMEVVAWVIEKQARRYDREVETGGQVSEGLAIAHKLDTVIDKIKITNNFKNIKLPITPKERAEFIKSLPKEQEQSYRYSW
JGI25910J50241_100040275	F000450	AGGCGG	MGDRANFGXVQPNGHTXVLYGXWAGHNMLANLAEAVFKARPRWNDASYATRIAISQMVADDWNSETGWGLSVNLINDNEHKIAIVDFKQQTFSLHEEAPHNDLDNKVRGMSNEPIFTMDLSNFVEKYADVIVAV*
JGI25910J50241_100040276	F006984	AGGA	MPNWVYNTLTIQGPKSEVDMIKDRLNKPFTLAQENHGMGDINPHGFPTKIKLVEYNNPVFAFL*
JGI25910J50241_100040279	F001460	GAG	MLGYTESDLNRMINAVHDSKLFYLRTPSDLMDKTELRTDLEMAVSFLQGLWAEGYFDNAQI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25910J50241_10004027

Overview

Ecosystem & Geography

Associated Families

Sequences