Scaffold JGI25910J50241

Basic Information
Taxon OID	3300003388 Open in IMG/M
Scaffold ID	JGI25910J50241_10013909 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003388 Open in IMG/M

Scaffold ID

JGI25910J50241_10013909 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2868
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2868

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (70.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006112	Metagenome / Metatranscriptome	381	Y
F006698	Metagenome / Metatranscriptome	366	Y
F007524	Metagenome / Metatranscriptome	349	Y
F010245	Metagenome / Metatranscriptome	306	Y
F105150	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25910J50241_100139091	F007524	N/A	RKLSNTHAVAINKLMLPLISTLAYIDDENDFNTFKMYADDIAHNVSALCVFNSTLDAEVLHDNIMRQDTCPREHFYTVLRYIEDNKLINKRMFACS*
JGI25910J50241_100139093	F010245	N/A	MTKTKRTARSDCNYVIYVALHNGKAYIGLTRKTMSTVDKSVKERWRKHISRAKHEDRDWEIYRYIKQGNWTDWSHEVITVIRGRAEAYAYERELVKTLRPELNDQYM*
JGI25910J50241_100139095	F006112	AGGAG	MKQDYTLYIYKADKRTKTGERLFSTTVWTGRDEAGMQREVEELHLHHYPRSQFRMEYCPSMKTVKNXMSGKDVQIAHDTPRSCDPSSELYWSM*
JGI25910J50241_100139096	F105150	GGAG	MYRYVCQMFYKDRLYSGHYWKDYSLARACKEMDKLCEHSPGMRFELTDYATGAIIKTVEHTIPKQERTYAIX*
JGI25910J50241_100139097	F006698	AGGAG	MRXYXELATXERDGYTIIVDKSYEDMDPKDCFDDTCFDMKEMYNDIDSGNLDWFMLRVRVLVEGLELADEYLGGCLYKDAREVLTDGTAEDIIDQAIDRAKGQVYRLSRVFGGLSEAVDRECV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25910J50241_10013909

Overview

Ecosystem & Geography

Associated Families

Sequences