NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25910J50241_10183180

Scaffold JGI25910J50241_10183180


Overview

Basic Information
Taxon OID3300003388 Open in IMG/M
Scaffold IDJGI25910J50241_10183180 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)533
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F014847Metagenome / Metatranscriptome259Y
F028145Metagenome / Metatranscriptome192N

Sequences

Protein IDFamilyRBSSequence
JGI25910J50241_101831801F000962N/AMNIHVSDEIKAKYPHMEFRGKQRTLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDW
JGI25910J50241_101831802F028145N/AMKLFYIFIVNLALSLFVSILLYKLFKIDISPVTISLATIVIYICLPQRFHDWVSEK*
JGI25910J50241_101831803F014847N/AMDFESNSEILANTMDQIHILHKENAKLRQEVEQLKEINSELNRKLKSIQALFL*
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