NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25909J50240_1002168

Scaffold JGI25909J50240_1002168


Overview

Basic Information
Taxon OID3300003393 Open in IMG/M
Scaffold IDJGI25909J50240_1002168 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5051
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F001019Metagenome / Metatranscriptome804Y
F001781Metagenome / Metatranscriptome635Y
F007470Metagenome / Metatranscriptome350Y
F034924Metagenome / Metatranscriptome173Y
F037727Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
JGI25909J50240_100216811F001781GGAGMKPADKDKLNECLKILDTTDLGLSLVWLWTWSTINNXFEDETYKQNCTIDEMWDHLCEAVEAGQGFSLEYGAEQHNDDVQDWMLSRDYIVDTMFEEDEEEDEDATD*
JGI25909J50240_100216813F001019GAGGMSDYVPXXEILEVNYSCSPGGIDMFEVYDKSDIPLDIPIYETQSLTEAVLFCYNLGKDFTVRTYAEWEERESLYASV*
JGI25909J50240_100216814F034924GGAMPLYRVFGTRFTNYYTIVSATDEYQAAELANARPMIEWDEIPTDDVVEATDVFLDEDTSEDLEYKL*
JGI25909J50240_10021683F007470AGGAGMDYKDGFEDGVKFAREVIILNLRSWAETTADDGQVMDDIADRLEXGKVDYDL*
JGI25909J50240_10021685F000450AGGCGGMGDRANFGFVQPNGHTIVLYGHWAGHNMLANLAEAVFKARPRWNDASYATRIAISQMVADDWNSETGWGLSVNLINDNEHKIAIVDFKQQTFSLHEEAPHNXLDNKVRGMSNEPIFTMDLSNFVEKYADVXVAV*
JGI25909J50240_10021689F037727AGAAGGMHKSSKFLEYIKLHRISLIQDNENLIQDTNAPDWNFLQGQIIATXHLLSVATDIMNENERV*
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