NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25909J50240_1029804

Scaffold JGI25909J50240_1029804


Overview

Basic Information
Taxon OID3300003393 Open in IMG/M
Scaffold IDJGI25909J50240_1029804 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1203
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001725Metagenome / Metatranscriptome645Y

Sequences

Protein IDFamilyRBSSequence
JGI25909J50240_10298041F001725N/AMAAISTGTTCLYGIPNGTVTNLFVQSYSLSASFNAEATVADEDGRTVTARYDDRKTELTVEGIAKTSTMPILGASLSFTVNTASAYPAGTASTAFVGTITKIDDKGSNKGFTSVSITAVDYEQISP*
JGI25909J50240_10298042F001055N/AMGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNAAIQTLPKAVVLCDSARPPGDLPEGEGNYACSVRITLFSNADDTTLADHRLRCAALVGNMRDLVSIQAAFTATGDATCYDVTIMSEDEGIDERSWATSFSFDVLTVFPA*
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