NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25909J50240_1093782

Scaffold JGI25909J50240_1093782


Overview

Basic Information
Taxon OID3300003393 Open in IMG/M
Scaffold IDJGI25909J50240_1093782 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)597
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047683Metagenome149N
F103267Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
JGI25909J50240_10937821F103267GGAGGMEVELFAFPTMENPKAVENTFCNLLNAQRRGESLPVEALDWMDTANNWLMESK*
JGI25909J50240_10937822F047683AGGAMTFTVEQIESTHNPAVTRNNYYPVRAYWVPIELREQVLAAYRETNTRVRLRYRGPRAVSIGREMTRNDKTTYLRSRTRAMQDCLIADATHFTVYDYTAR*

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