Scaffold JGI25920J50251

Basic Information
Taxon OID	3300003404 Open in IMG/M
Scaffold ID	JGI25920J50251_10012542 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003404 Open in IMG/M

Scaffold ID

JGI25920J50251_10012542 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2843
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

2843

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (11.11%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007690	Metagenome	346	Y
F017998	Metagenome	237	Y
F018001	Metagenome	237	Y
F024555	Metagenome / Metatranscriptome	205	Y
F038234	Metagenome	166	Y
F062757	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25920J50251_100125421	F017998	N/A	MNLERLDLEKYEVLELERSNTIADPLYQQWMSELKVSSSYSDREGIIRANDLNNQYTYSVLAGNKSTKFSVSSILSVFK*
JGI25920J50251_100125422	F038234	N/A	MLTIKNIDSLKGTYVGHWKIHYVANLQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGDYLMYCQETSNXHYLPIESIGDRDVFIRFLIDELI*
JGI25920J50251_100125423	F062757	N/A	MLTIQNISKLGGRRLFGGWIITAVGGNXNEPQYILDXHCXGPIGNRIDRCTXSLNRIGIVQRTMGRPVELAYFLYYNGEXTDVCVTKDWILNPDNFISQLKYIINQYHNKR*
JGI25920J50251_100125424	F018001	N/A	MLTIQNIGDLXGAQLNDWKVLTAGEDNRPELGKNIYIITFARXDNXGVMLDDRAGVLIDRNINPLLKGYHIKVVYESWDYEIHTTTWPALTIKGKDAFFGMILYRINEEYYKRNSK*
JGI25920J50251_100125425	F007690	AGG	VDDIDKLNNMLTIKNILKLQNQPIWDGWEVKLIYEGNHNDTYIFELHRESAWGNGDCTIMLERTGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKEKL*
JGI25920J50251_100125427	F024555	N/A	MLTIKNIEKLYKQDVGEWRIGKVLTLDSSYLIQLYKHNRMDTKQVNIERTPIGEGDTALYELWFWADDSGTAKPIRRLLRKCDFELGPSYVIKNIENMMNLK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25920J50251_10012542

Overview

Ecosystem & Geography

Associated Families

Sequences