NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25920J50251_10014200

Scaffold JGI25920J50251_10014200


Overview

Basic Information
Taxon OID3300003404 Open in IMG/M
Scaffold IDJGI25920J50251_10014200 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2650
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000722Metagenome / Metatranscriptome922Y
F011919Metagenome285N
F031092Metagenome183Y

Sequences

Protein IDFamilyRBSSequence
JGI25920J50251_100142001F000722N/AMDTLEPSKVTEESYPETGITQETRKMYPENYSDKYNKVFKEFVDDIMKPARPIDRLNDHEILLDELTLMYDAHMTIGGEQNRFNASVIRAAINCIKALSA*
JGI25920J50251_100142002F011919N/AMSDLQLFAPTRGLGAYREELAIDRNIVIVSPSAKPTSALAALRALPKSGSKRRRVYEYLKQTGGATDEEIERALGISGNTVRPTRGSLVRDKFVYATELERPTLAGNMAIVWKAR*
JGI25920J50251_100142004F031092AGGAMSTMKEQLNDLSTMLDALEKLNRLHDFIGKDDIDSRLRWAAKNTADKINRLSNLSE*
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