Scaffold JGI25911J50253

Basic Information
Taxon OID	3300003411 Open in IMG/M
Scaffold ID	JGI25911J50253_10005763 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003411 Open in IMG/M

Scaffold ID

JGI25911J50253_10005763 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4665
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (7.14%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4665

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (7.14%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007690	Metagenome	346	Y
F017998	Metagenome	237	Y
F018001	Metagenome	237	Y
F019478	Metagenome	229	Y
F038234	Metagenome	166	Y
F053288	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25911J50253_100057631	F053288	N/A	MITIKNYNSDVNLGVFYGWDMKYAMEDKDFYSFEFEHRKEQKRVYVLVHRNKLKSKKRAKHLPINGDLHEVYIQDMVSDKWRRTVNLAKTSXNKXXFYNLIESVIDDEYGLPF*
JGI25911J50253_1000576311	F038234	N/A	MLTIKNIDSLKGTYVGHWKIHYVANXQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGDYLMYCQETSNXHYLPIESIGDRDVFIRFLIDELI*
JGI25911J50253_1000576312	F017998	N/A	MNLERLDLEKYEVLELERSNTIADPLYQQWMSELKVSSSYSDREGIIXANDLNNQYTYSVLAGNKSTKFSVSSILSVFK*
JGI25911J50253_100057635	F019478	N/A	MILKIKNKDRMVGTIYWNRRFKCLQVHETDTNYRFQFDDSEVPSRYVWIEVRKIGRIDNEGDWSYSLNYMRCNQHLVTAKWFGDWKNVTKTFGDALKKQF*
JGI25911J50253_100057638	F007690	N/A	MLTIKNIKKLVNQPIWDGWEVNDIYKGDHNDTYIFELVKRKSLPMHNGLCTIMLERTGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKQNL*
JGI25911J50253_100057639	F018001	N/A	MLTIKNIEYLKGKELNDWRVLDAGQDLRAELGKNIYLLTFARIDKIGVMQDDRAGVIIDRNINPLVKGYHIKVVYESWDYEIHTTTWPAVTIRDKDAFLGMVMDKINDEYYKRNR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25911J50253_10005763

Overview

Ecosystem & Geography

Associated Families

Sequences