NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25911J50253_10006918

Scaffold JGI25911J50253_10006918


Overview

Basic Information
Taxon OID3300003411 Open in IMG/M
Scaffold IDJGI25911J50253_10006918 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4287
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003826Metagenome / Metatranscriptome466Y
F044497Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
JGI25911J50253_100069182F003826AGGAGVDPITIGLAFTAAQSAVGYIKQAIALGKDINSLAGQFSKFFESSDAIHRERTKIKVKGTLLGKTDAELGHEALQIAMHSDALRQAERELKDMILWQLGKPQIWEQMIAERTRLFKARAEAQRAEEERALAHKKKMADQFIFAMYFIAGSVILFAIAMGGIGIYGAMEEKRIYEEKVAKRLLVIRQQQKERDKKEREERDKAVGGG*
JGI25911J50253_100069184F044497AGGMFEWILIFALAKEPDVKKWPEWECVRWTWSGDVYNRRVVCLEWRKRHNRWIP*
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