NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25912J50252_10018680

Scaffold JGI25912J50252_10018680


Overview

Basic Information
Taxon OID3300003412 Open in IMG/M
Scaffold IDJGI25912J50252_10018680 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2227
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002977Metagenome / Metatranscriptome516Y
F003080Metagenome / Metatranscriptome508Y

Sequences

Protein IDFamilyRBSSequence
JGI25912J50252_100186802F003080AGGAGMTTAQELTDQLINRAKNLKEFVVEREWESIPAGVVRYNIQHTQGHLARIFVPALTQSEAESMVXEWFEEEV*
JGI25912J50252_100186805F002977GAGGMNTXVPAEGIMKTNDWGDSRVYRIACNCGDENHNHNMWVEADDCDIVVTIYTTGKTNWWSKTRWYHIWTLLTKGYIDTESTVHLTKQQALNYAETLKSAIDDLEAFRNARQHNEERATIKKMANEQDCV*
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