NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25912J50252_10029284

Scaffold JGI25912J50252_10029284


Overview

Basic Information
Taxon OID3300003412 Open in IMG/M
Scaffold IDJGI25912J50252_10029284 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1674
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007102Metagenome / Metatranscriptome357N
F018367Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
JGI25912J50252_100292841F018367N/AYTPWNNTETKIVLVCRVVLPSEKYGANEFLDKDGRVCRWVLETKNDRPN*
JGI25912J50252_100292842F007102GAGMVEFAGGCWRLRMIDPISAFAIAQGAIKGIQAAIKMGKDVQGITHDVMKFFDAKDAVAKEAIKDPKKKYSSDTSQAMSTVMQLHELNKAEEELKWHFINQGQSALWTQIVLERNSIVQRRKTQEILDAKAAANRKKEIDEVIIAVLCILVAAAIFTLVGWGVIALKGK*
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