Scaffold JGI25912J50252_10072274

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25912J50252_10072274

Scaffold JGI25912J50252_10072274

Overview

Basic Information
Taxon OID	3300003412 Open in IMG/M
Scaffold ID	JGI25912J50252_10072274 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	882
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F069849	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25912J50252_100722742	F000166	AGG	MPNIPTPEQSQLFAQSVRKWQQVLSLGDWRIEKGSKPAKAAMASVEFNTSARLATYRLGDFGAEKITPESLDQTALHELLHVFLHDLMTVAQDPKSSQDEVEMQEHRVINLLEKLXSKDTNGRS*
JGI25912J50252_100722743	F069849	AGGA	MGAHNETCTDMEFIQLWGQLQSAQRMAEHLGINNRAVHLRRRWIEKEYNMTLNAKDHRGDLYNKNRPKSFS

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