NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI25912J50252_10124797

Scaffold JGI25912J50252_10124797


Overview

Basic Information
Taxon OID3300003412 Open in IMG/M
Scaffold IDJGI25912J50252_10124797 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)605
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029747Metagenome / Metatranscriptome187Y
F038235Metagenome166N
F039047Metagenome / Metatranscriptome164N

Sequences

Protein IDFamilyRBSSequence
JGI25912J50252_101247971F039047N/AVALKVALTNSGRRIDELMNDKPDWRCLYEFDKNSVEKAQKVLSKMIANS*
JGI25912J50252_101247972F029747AGGMKYTLMLDTDTCTSFSTYPHTREGLDKALDRVDKVRSKDGFKCANIVSDRDGEVFVLDMXLAIN*
JGI25912J50252_101247973F038235N/AMIREILAPFERVTYVREDGNQAVYKVFRPTKHLFVNKKKDNGAVVGFRAWKMPDTGADERMGWRSFRFDRIASRKLT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.