NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25922J50271_10000001

Scaffold JGI25922J50271_10000001


Overview

Basic Information
Taxon OID3300003413 Open in IMG/M
Scaffold IDJGI25922J50271_10000001 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)142728
Total Scaffold Genes112 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015065Metagenome / Metatranscriptome257Y
F032631Metagenome179Y
F037076Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
JGI25922J50271_10000001103F032631N/AMFGEDGGSWYDNIFLIDILIFVFSFAFLAIAGIIMYFCYPLVMTAFQT*
JGI25922J50271_1000000155F037076N/AMRNNKINMITLDVRISCDTFWNYNFNIPIRIDDYYNPNDRNINLNIRNDDRHRSNTCEIGNIGRSDPLFLRLEEYLVDYVIQFIYDDLVQKRQNRDIPILLKKARKFHIHGRTLEDLLFPSNSTNEHVLPENIVYICTHC*
JGI25922J50271_100000019F015065N/AMSSTTQFKAICTQNDMRLGKNIEMKLFTLEYNYNNANFDIVSLINANIHKLLYEVNKDIIEAIEIYPNPSDSSEQNILYKFLDIGGDLGGLKTYMYVNTKIAKRYASNSNTEIIFTSKSIPFEHHSELIRQKYKLLEYPLYIQKYIYDEHKNNGVISNIQVLHMFKLKPDQETELTVAMENAIGILIKKMYFRLKVAIESLR*
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