NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25922J50271_10000004

Scaffold JGI25922J50271_10000004


Overview

Basic Information
Taxon OID3300003413 Open in IMG/M
Scaffold IDJGI25922J50271_10000004 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)81537
Total Scaffold Genes103 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)88 (85.44%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F002501Metagenome / Metatranscriptome553Y
F008245Metagenome / Metatranscriptome336N
F035307Metagenome172Y
F059959Metagenome133N
F080044Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
JGI25922J50271_10000004103F059959AGGAGGMEKIKQQVSDLAHNLVTIVMITLFLFPVQPANALVVKPLVKTEAQLKQEVLDSFSKEIYKPSEMLT
JGI25922J50271_1000000412F000376AGGAMSTYQEKAKECKCCGKHVPLPTVLKEYNGIVLCPTTFSNVVEYKRIWIASGKRPMGNIRKHFSEYVQQIVEETIDKNQDGTL*
JGI25922J50271_1000000414F000369AGGMSEIEPAQHFDRMNRVVEELLKGNTPTQIATITGFQRKEVLEFIDEWKTVVHSDSGIRDRAREAISGADQHYAMLIKEAWKTVEDADQAGQLAVKSGALKLIADIETKRIAMLQSVGVLENNEIASQIVETERKQEVLVKILKEVSSTCPKCKMDVAKRLSQITGIIESVPVEEADVV*
JGI25922J50271_1000000424F008245AGGMAEEKNTLELISNITEFNDLHEFMKDEHLDKALAIVVKLLMNPDVPSAKAPMLIMELQAMSTKFAVMSSVYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS*
JGI25922J50271_1000000427F080044AGAAGMPNLNEFFNKKIEQKEYELERLPGLRACNTCDEDVNGASWDPIELVMSWRCSKGHETVFKVQ*
JGI25922J50271_1000000439F002501AGGMWCSKCGGRVFVDRVFSQKLHIELFCIMCGKRNMVNKEMSAFGKWLDAKETATLKNYGISS*
JGI25922J50271_1000000452F000258GGAGGMTDYNYDVMLDLRKHLWSQLKSNSLFQASDYYSDNLGEELIPIIPVQQQPEMNQFLSGKKHIVYDKVGMSYEDNWVICCEQILFTIYSTDISEINQIRNLMTDLYRRMDESARDTNLYSGISQKFKFYSIFVADISPTAPSEELAGFLSADVILEVKYARHVDSNGRFL*
JGI25922J50271_1000000453F035307GGAGLDTSAVLVQAASGLHKSMSGAKGTVLKDSTVAQISAAIYYQASVVSKVTTNKQFQSKFQTILFNQIEKDFGNYVDSQARINPKTLHHVYEWKKVGVPSSRLFNLKMSGVSGLSFKIVSEFKPSKSMVPTNFGKSRHVFTNKASVMEAGNPVVIRPRSAERLVFEIDGFVVRMPKGMPVTVKRPGGGKATGRFKIAYAQFFTGNLVNLSIKNSRFQQIFNSSMTKALKLPGDIRKVKYSFSPNTVNMQAETALVAAFGGAV*
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