NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI25922J50271_10000084

Scaffold JGI25922J50271_10000084


Overview

Basic Information
Taxon OID3300003413 Open in IMG/M
Scaffold IDJGI25922J50271_10000084 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25422
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (84.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010540Metagenome / Metatranscriptome302Y
F075663Metagenome / Metatranscriptome118Y
F089841Metagenome / Metatranscriptome108Y
F091429Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
JGI25922J50271_1000008411F010540AGGAVKKIRVIVNGVCFYTSKKNIKQKCVGDFGLQNDALAWALDQMGTNKGIGTTVRYFDHNMKQEIFQIQLTEV*
JGI25922J50271_100000844F075663AGGMTKNETIALIIEHIVMQGYSDADKFVNYITTILPMMSTSDLLAELNTLELEI*
JGI25922J50271_100000845F089841GGAMNTIFFSKRQELRKDYYVIPFSCSDLNLVNTEVLHRDRSEAEQKVLDNIQDRISLALLENGFEMESVNFRNMAISAKKIETYILKYSSQVM*
JGI25922J50271_1000008454F091429AGGAMPTKLNTEFNYRYQVIGETVWEKIKTLKGFYEGRIRTSHGEKISEMRHNSKLMELQSLKDSNALPHVILNMEADILEFETGLQIQIEAFELNRQEIKILENLLAECYEIAEPTRIKHLDGTPYTDEEMFEANAANEFTAMIGKEIYAEVISTGLPSPTKLRNAMSNPHTWKALQQIGLIPDQAYMLVGSNDPLKIGFEKIVTSSNTNQLIGEVTEKKLTN*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.