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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003413 Open in IMG/M |
| Scaffold ID | JGI25922J50271_10000230 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16841 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (4.76%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002391 | Metagenome / Metatranscriptome | 564 | Y |
| F003127 | Metagenome / Metatranscriptome | 506 | Y |
| F012672 | Metagenome / Metatranscriptome | 278 | N |
| F089575 | Metagenome / Metatranscriptome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI25922J50271_1000023018 | F003127 | N/A | LFPIASIATGPTLTNNEITTLTVTGEVFQYKLKSNLSSYTAPIRVNKENGTLWYEQSLNMILASDTKELRAEIHLLGQNEVVAIVEKADGTYVALGLDEGLQINDGSEYTSGVLKSDRNGHSIVLAGLENNEVPDVAAGIVATLLTQQSPVV* |
| JGI25922J50271_100002303 | F012672 | N/A | MAYSDEFIKHLEELAHIYIEECISHKKEMISNKGEIVLVLDRHIPTIDYFLRIWIPIVRKEKSIVRETYYTWLNSDDKLKSDTIKKIDELFKGLAVDIVGNEGKGIFYAKNRLGMHDRQQVETRNVDNFDFDE* |
| JGI25922J50271_100002306 | F089575 | N/A | MADDLQFLDSLGISQTELTQPQTAYEKFILGLANEVTAQFQEYIFTNVNNTGGLAQSVVYFPTGALSFEIQADEYYKFQDEGVNPVGQNKFQTPYSFKYPNVSKNHAKAIQQWKGYDLSHAYASASATKNKYGIKPRNITSNVMSNEVLDRIANDLAAVTGLMFEISFTKNTRTWQ* |
| JGI25922J50271_100002309 | F002391 | N/A | MALWEEILTASQGTLIVNDTTEKTIVYDAIFVLEDTVFASIKVGGVDIKAELITTPGTAVKAGAMIRCTGARKFSAIDLTSGSVALIL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |