NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25922J50271_10000306

Scaffold JGI25922J50271_10000306


Overview

Basic Information
Taxon OID3300003413 Open in IMG/M
Scaffold IDJGI25922J50271_10000306 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14640
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (46.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054031Metagenome / Metatranscriptome140Y
F058087Metagenome / Metatranscriptome135N
F071229Metagenome / Metatranscriptome122Y
F093858Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
JGI25922J50271_1000030613F058087AGGMNTQARKIAFALILLSFVFLGMAFLTSCVNVPIPPFGERIGELGNLQLALSAKYIPVTPPESPGENGMAFAWQKYGEAKLLRDK*
JGI25922J50271_1000030619F093858GGAGGMIDFHDPSAVCRSIGYFLDFLTITVPVISLAIFAWRIAR*
JGI25922J50271_1000030620F054031GGAGGMSDPNWSEIEANRDRAEALPECNWTTETPETEAAVKASGSTFGIPLRETSRRLERQRDALYALLNRRATQ*
JGI25922J50271_1000030621F071229GGAGGMSDTTALISAALIMASLYTTFHLGIECERERARKARRRRWDEEDNSPK*
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