NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25922J50271_10000377

Scaffold JGI25922J50271_10000377


Overview

Basic Information
Taxon OID3300003413 Open in IMG/M
Scaffold IDJGI25922J50271_10000377 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13057
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (82.05%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000684Metagenome / Metatranscriptome938Y
F002515Metagenome / Metatranscriptome552Y
F010684Metagenome / Metatranscriptome300Y
F015600Metagenome / Metatranscriptome253Y
F023106Metagenome / Metatranscriptome211Y
F063707Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
JGI25922J50271_1000037718F002515N/AMKKNAEELRRLMELRRSNAASAVPNKKKYDRKKCQSLMVELKKERGPHYD*
JGI25922J50271_1000037720F000684AGGMTLHGYTYQIGDLFTTSKTGVTGRIAGFSPISNKVTRVSLVLANGSRRLAMVKTSK*
JGI25922J50271_1000037731F015600GAGGMDTTQLEPHLQRMVDAGLSGTDILHGELKNLMLIAEQELTEIATEEEEGGYSDAMLSMQRTEAEGRLDALVEVYALTYQLAFAISERTKNA*
JGI25922J50271_1000037732F063707AGGAMPNCLDCNNTTRFWYAETGHKLGIYNESGVMEDVEDDYWDEPTDGMCAECESVNIEGEL*
JGI25922J50271_1000037735F010684GAGMAEFKVEVIFEPTGDYMTFRYEAEAEDEEALLNEVLSQLSIVSFKENN*
JGI25922J50271_1000037737F023106GGAMRISRRITEEEKVANRIGNMVSDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYAYNNI*
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