Basic Information | |
---|---|
Taxon OID | 3300003413 Open in IMG/M |
Scaffold ID | JGI25922J50271_10000771 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 9389 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (12.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001009 | Metagenome / Metatranscriptome | 807 | Y |
F003904 | Metagenome / Metatranscriptome | 462 | Y |
F014128 | Metagenome / Metatranscriptome | 265 | Y |
F033400 | Metagenome / Metatranscriptome | 177 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI25922J50271_1000077112 | F001009 | N/A | MASNLNSEFNYRYQVIGNTPWEKLKTLKGFLVGRKRAAVLEQVADLKYKAKLAELKHLKELPALPHVILNLEAEILELESHLDDQAHAFELNRQEIKILENLIAELYTIVEPTRIPGYTDDQMFEANANNEFTVTIGREIQAEIIANGRPSPAKLLNAMSNPQTLESLKLVGLVPKETILLEQSDIIDALKLNNINEPKLIE* |
JGI25922J50271_100007713 | F033400 | N/A | MNTADNIDNPFFTYKFDGKKVKTNKLVKNLNDDIALTQAINLFREENNMTKARNPYSWWKYVLATITYFPKGVEYTTVINILNDIAGVNVSKSTATLLARATAGAAPCVVRREYTVRLPDLAYNTKLTASFSRKTAKTKKGRPAFQFKFANTKDARETILGSAPEMKSLFDLLDKKIV* |
JGI25922J50271_100007718 | F003904 | N/A | MNSVIIKVKSYLWFVLLPVAILTLLSISSLKDIEQGYTRFRFGRDVTLYLRKSTDLLTYLGAAYTTTSDKKFLNQFNDHLKEREKYFNEEIFISKILTQEELKEFRKGLDISNDLAKDVENAAFEKMDNKAFFSDKYLDYKKRLYDNNQSFRNLINDSSEKIIKDEMVRLNIYLYSLCLIILGLVYLIKHDIKPVTKTKKKVKRKR* |
JGI25922J50271_100007719 | F014128 | GAG | MDQLQKFGIQIGFLFSGLFGAILMATKADKTDAKSVILSLIGGMSAANFLTPLLVDTLNVTNVKHQNAIAFIAGFLGLKLVEIVSEKFLEKVNGKTTKTKKKVKR* |
⦗Top⦘ |