NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25922J50271_10000829

Scaffold JGI25922J50271_10000829


Overview

Basic Information
Taxon OID3300003413 Open in IMG/M
Scaffold IDJGI25922J50271_10000829 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9080
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014249Metagenome / Metatranscriptome264Y
F058998Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
JGI25922J50271_1000082911F058998GAGMKKKPSDSPPQPASDLQGKIREAEFKNILQKLKDGKTLTARESKIAAEFAAKRDGKGLTQAELAAAWGMTQPNIHKMVKQGMPMTSIEAATEWRKDWLETHGRGDTAPENIQQAKLRKTLLECEKIEFALSVDRGEYIKNAVVREAGIRIGAIFSAKLAALVNDASGALAGLDEASLRKKLHERTQAILAEIRNELEKV*
JGI25922J50271_100008297F014249AGGAMAMNKSFFGLPLATLQELQGDFTACLKAIAVAGASYSIAGRSFTRANLAEVAQTIKELQSAIDNASGSRIRRFTPTFPTQRP*
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