Scaffold JGI25922J50271

Basic Information
Taxon OID	3300003413 Open in IMG/M
Scaffold ID	JGI25922J50271_10001899 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003413 Open in IMG/M

Scaffold ID

JGI25922J50271_10001899 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6053
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (87.50%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	10 (100.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

6053

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (87.50%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

10 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002935	Metagenome	519	Y
F020171	Metagenome / Metatranscriptome	225	Y
F031497	Metagenome / Metatranscriptome	182	Y
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_100018991	F031497	AGGCGG	MGKTPEIKVAQAIVNLTEDHWFNPAIFGRYLAEQPMYTIDRIMEMVASIISEQSKIHGVHGYTSEGLMLAVELNECIKAYQEVTQLNNLKLPARSFTIKKREEPIVRQGFGWREEEDPFSL*
JGI25922J50271_1000189910	F001125	GGCGG	MGDRANFGFKDRKGDTVFLYGHWAGHRMLENLADAVSAAEPRWGDEEYATRIAISHLVGDEWKSETGWGISINRLADNEHKVPIINWAAKTFTLMEEDLTTEVFSITLDAFVTKYSSQPSMV*
JGI25922J50271_1000189912	F001043	GGAG	MSDYKDGFDDGYKFAREEIMEKLAEIDIADIDSWILDRLSEMIEGGNL*
JGI25922J50271_1000189913	F000311	GAG	MYFELTAPSQVAFARAIWDAELIGLDPQTIAPLTFNIGTGSIEKVSKIRDKYNLKETYTSDYEPTGYTGR*
JGI25922J50271_1000189915	F002935	AGG	MRDRTKGYVGNVLDGKKLAIIATEIVKAQYNNPSELTVDNLLLIELEEKNVFGDPKYAVVCSEGVGWEQDEYGCLEIPTNIGAMGLYNGRVFISIDKVKSCQTLFKEDISDYIRTFGDRLDRNCSLWQSKMSVEPATILG*
JGI25922J50271_100018992	F000852	GGA	MATKREYLKQQGITVGVRGRFSGAAKVALAEAEAKGIKFTAEVPAGKAK*
JGI25922J50271_100018993	F000441	AGGAGG	MKMSDVYINDQLNKAQQLLWGGSETENIEAHNIIAKLIKDRIEQTDLS*
JGI25922J50271_100018996	F084239	AGG	MEYLKIHLISLEQDLEQIDYVNGHHFYRVKQAEIENTRHILSVATDIMNSSNERYNNE*
JGI25922J50271_100018997	F001460	GAG	MMLGYTAEDLDRMTNAVHDAKLFYLRTPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFD*
JGI25922J50271_100018998	F020171	AGGCGG	MAELFIDTIAEHITGAMQQEIGEALFDQWSYNNLEEGEAYAEFRFMEYASRELKQQYNEYYGYIEGDEFLL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25922J50271_10001899

Overview

Ecosystem & Geography

Associated Families

Sequences