Scaffold JGI25922J50271

Basic Information
Taxon OID	3300003413 Open in IMG/M
Scaffold ID	JGI25922J50271_10003616 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003413 Open in IMG/M

Scaffold ID

JGI25922J50271_10003616 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4426
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4426

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F003291	Metagenome / Metatranscriptome	495	Y
F005389	Metagenome / Metatranscriptome	402	Y
F009005	Metagenome / Metatranscriptome	324	Y
F029999	Metagenome / Metatranscriptome	186	Y
F093404	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_100036161	F000785	N/A	MRVSNKTKGMRFDCNRLWNWAHEKLGASKCEAIAFYWDMDEDSECGYYDWEKTIWINLAQCKRMIAVQKTLLHEWTHAQQTFRWYNHYQMKYGYKNNPYEIQARENEKLVKRAYRKRTTK
JGI25922J50271_1000361610	F003291	N/A	MNSNTQKLVSIFTQDELSALMTAMGGYINTKSKQRRSTGIEVVAFNKIVDALLVSNYLNAVEVEVKPDANAPMGSAAYKAYEAMYDSDVRAHS*
JGI25922J50271_100036162	F093404	N/A	VHTENEQQNKQVAYNKCPHSTCELHENKEGEYYPVCQPIETPGIIRSEYLPIGRRLQYPTKWGRKRASLHLLEFKIEDAKRELENVQTELAKLERCLSDVQNWDDDSK*
JGI25922J50271_100036163	F009005	N/A	MLTENEMLAKATAIGMDEELLSYAKQIQRQLSAEGDTADWLDCLEMAYNELIIS*
JGI25922J50271_100036167	F005389	N/A	MASNKSKAAKRGNIYETVSNNIQKITRPSGTTSYRVRVTEDGVMYSQYETSLKKAKSLRNEWIGA*
JGI25922J50271_100036169	F029999	N/A	MYNENTFKNFSASKMSYNPKFSVSVEYTDFMGKTHRIECKTRKALNEARAFLSMFKSESAKISSILNEYPVKLGKFPKKYHSEIKSDLTAAGLGMASKYLLK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25922J50271_10003616

Overview

Ecosystem & Geography

Associated Families

Sequences